PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01027345001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family AP2
Protein Properties Length: 410aa    MW: 46046.4 Da    PI: 6.1363
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01027345001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.42.3e-1058114155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+ ++++gr++A+++d  s+n   + +  +  ++   e Aa+ ++ a++k++g
  GSVIVT01027345001  58 SIYRGVTKHRWTGRFEAHLWDkSSWNDiSNkRGRQGAYYNE-EAAARTYDLAALKYWG 114
                        57*******************77778885547777778888.**************98 PP

2AP245.61.7e-14154202455
                AP2   4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +GV+ ++ +grW+A+I  +     +k+ +lg++ t eeAa+a++ a+ +++g
  GSVIVT01027345001 154 RGVSKHHHNGRWEARIGRVLG---NKYLYLGTYSTQEEAAAAYDMAAIEYRG 202
                        8**************988422...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-1358124IPR016177DNA-binding domain
CDDcd000188.66E-1658122No hitNo description
PfamPF008476.6E-858114IPR001471AP2/ERF domain
SMARTSM003804.3E-1759128IPR001471AP2/ERF domain
PROSITE profilePS5103217.79459122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-1059123IPR001471AP2/ERF domain
PRINTSPR003675.3E-66071IPR001471AP2/ERF domain
PROSITE profilePS5103216.687152210IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-16153212IPR016177DNA-binding domain
SMARTSM003801.0E-22154216IPR001471AP2/ERF domain
PfamPF008473.5E-10154202IPR001471AP2/ERF domain
CDDcd000181.68E-12154212No hitNo description
Gene3DG3DSA:3.30.730.107.4E-16154210IPR001471AP2/ERF domain
PRINTSPR003675.3E-6192212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MVKRSSPGSS SSPSSSSTSS DAASRPAPPS GGKPKSRKKE AKKNSNGNGS NSKNKRTSIY  60
RGVTKHRWTG RFEAHLWDKS SWNDISNKRG RQGAYYNEEA AARTYDLAAL KYWGPTTPLN  120
FPLETYQKDA EEMEKMSKEE YLALLRRQSN GFSRGVSKHH HNGRWEARIG RVLGNKYLYL  180
GTYSTQEEAA AAYDMAAIEY RGLNAVTNFD ISNYVKLGRV EAQVQELAQQ LQPNTPIGPQ  240
NELQKEEEEQ LQEPVLSSSQ HLPSMDSSAM EIMDPADDPD LPWNFCAYST LLVPDVPLGK  300
GGELSDLFYE KGFEDNIDYM FEGAAGNEEE SNSAENGVKE NGFMHELEVD GKLQNVVGFF  360
FLSFFFLPKR AGIRKRGVDS CMQLFLYFVF LFYPFLPEVS KFLFHLSLD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.260.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4262300.0AM426230.2 Vitis vinifera contig VV78X076062.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010659009.10.0PREDICTED: ethylene-responsive transcription factor WRI1
SwissprotQ6X5Y63e-93WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLF6HIV80.0F6HIV8_VITVI; Putative uncharacterized protein
STRINGVIT_13s0047g00340.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.35e-83AP2 family protein